vignettes/setup_infomap_fanmod.Rmd
setup_infomap_fanmod.RmdIn order to run multilayer community detection, we will need the Infomap (old version). The source can be downloaded from mapequation.org, where you can find also the installation (download and compile) guidelines.
Once you compiled the code, save the path/to/Infomap in the infomap-setup chunk in the vignettes or into your code/notebook.
In the src/ folder there is already the linux executable for the Infomap. See Multilayer community detection for the vignette.
pathInfomap <- "path/to/Infomap"
# or
pathInfomap <- "src-exe/infomap-0.x/Infomap"The same applies for the multilayer network motifs: the executables for fanmod (downloaded from here) are already placed in the src/ folder. See Multilayer network motifs for the vignette.
pathFanmod <- "path/to/fanmod"
# or
pathFanmod <- "src-exe/fanmod_linux"Manlio De Domenico, Andrea Lancichinetti, Alex Arenas, and Martin Rosvall, Physical Review X 5, 011027 (2015) doi: 10.1103/PhysRevX.5.011027 Source: mapequation.org
Sebastian Wernicke and Florian Rasche, Bioinformatics 22, 1152 (2006) Version implemented by Tomer Benyamini, Yoav Teboulle, Tel-Aviv University github/gtremper/Network-Motif