Calculates the Motifs of a Multilayer from a network list

Source: R/muxLib_annotated.R

Calculates the Motifs of a Multilayer from a network list

GetMultilayerMotifsFromNetworkList(
  g.list,
  bin.path = NA,
  motifSize = 3,
  motifSamples = 1e+05,
  isDirected = FALSE,
  motifNullModel = "Local const",
  randomNetworks = 1000,
  randomExchangePerEdges = 3,
  randomExchangeAttempts = 3
)

Arguments

g.list

list of igraph network objects
bin.path

path, full path where the FANMOD binary executable is located
motifSize

integer, size of motifs to find (3 or 4)
motifSamples

integer, number of samples used to determine approx. # of motifs
isDirected

logical, indicates if the search is for an undirected or directed network
motifNullModel

string, "Local const", "Global const", or "No regard"
randomNetworks

integer, number of random networks
randomExchangePerEdges

integer, number of exchanges per edge
randomExchangeAttempts

integer, number of exchange attempts per edge

Value

Motifs Table

References

: Sebastian Wernicke and Florian Rasche, Bioinformatics 22, 1152 (2006) doi 10.1093/bioinformatics/btl038

Version implemented by Tomer Benyamini, Yoav Teboulle, Tel-Aviv University https://github.com/gtremper/Network-Motif/tree/master/fanmod/FANMOD-command_line-source