Return multilayer communities for interconnected multilayer networks

Source: R/muxLib_annotated.R

Return multilayer communities for interconnected multilayer networks

GetMultilayerCommunities_Infomap(
  SupraAdjacencyMatrix,
  Layers,
  Nodes,
  bin.path = NA,
  isDirected,
  seed = 12345,
  includeSelfLinks = F,
  numTrials = 100,
  twoLevel = T,
  preclusterMultiplex = F,
  addMissingPhysicalNodes = T,
  hardPartitions = F,
  verbose = T,
  addAggregateAnalysis = T,
  outputPrefix = "multimap"
)

Arguments

SupraAdjacencyMatrix

the supra-adajcency matrix
Layers

scalar, number of layers
Nodes

scalar, number of nodes
bin.path

path, full path where the INFOMAP binary executable is located
isDirected

logical, indicates if the analysis is for an undirected or directed network
seed

Integer, Infomap seed
includeSelfLinks

logical
numTrials

Integer, number of Infomap trials to minimize L
twoLevel

logical, two level Infomap comunity detection
preclusterMultiplex

logical
addMissingPhysicalNodes

logical
hardPartitions

logical
verbose

logical
addAggregateAnalysis

logical
outputPrefix

String

Value

Community List

References

Manlio De Domenico, Andrea Lancichinetti, Alex Arenas, and Martin Rosvall, Physical Review X 5, 011027 (2015) doi 10.1103/PhysRevX.5.011027 Source